Meme Mast
You can convert many other motif formats to meme format using conversion scripts available with the meme suite.
Meme mast. The inputs to mast including. The motifs showing the name width best scoring match and similarity to other motifs. Glam2 gapped local alignment of motifs.
Meme chip motif analysis of large nucleotide datasets. Lorem ipsum dolor sit amet consectetur. Gomo gene ontology for motifs.
Mast motif alignment search tool. Easily add text to images or memes. Glam2scan scanning with gapped motifs.
The meme suite supports motif based analysis of dna rna and protein sequences. Mast is a web based tool that can be used to search for sequences that match one or more motifs. Search a sequence database for occurences of known motifs.
Other meme mast utilities may be found in the directory soft allpathslg ver bin. Spamo spaced motif analysis tool. The meme suite allows the biologist to discover novel motifs in collections of unaligned nucleotide or protein sequences and to perform a wide variety of other motif based analyses.
Make mast waiting memes or upload your own images to make custom memes. This option only works for motifs where the e value is included in the motif file. Mast waiting meme generator the fastest meme generator on the planet.
Mast previously required a log odds matrix in the motif format but while the log odds section is used preferentially it is no longer required. Search results the mast results consist of. The sequence databases showing the sequence and residue counts.
The name of a file containing meme formatted motifs outputs from meme and dreme are supported as well as minimal meme format. Let s lorem suit up. Module load meme meme dataset options for documentation refer to the meme mast homepage or use the h option e g meme h.
Mast can ignore motifs in the query with e values above a threshold you select this is desirable because motifs with high e values are unlikely to be biologically significant if this option is disabled then mast will use all the motifs in the query regardless of their e values. You can convert many other motif formats to meme format using conversion scripts available with the meme suite. Mcast motif cluster alignment and search tool.
The search results showing top scoring sequences with tiling of all of the motifs matches shown for each of the sequences. It can be used to look for sequences that contain motifs found by meme by other motif discovery tools or that are taken from a motif database. A query file containing meme formatted motifs outputs from meme and dreme are supported as well as minimal meme format.
Where ver is the version of meme mast you are using.
